Sequence
atgc intronic sequence ATGC exonic sequence...ggtatgttgtttatggtatttcagctgtatttaattcgatggggcaggcataagtatcttccattcttttttatggtatcttttgtcactcatgtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G458035_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 3'ss of exon 6
ggtatgttgtttatggtatttcagctgtatttaattcgatggggcaggca--taagtatcttccattcttttttatggtatcttttgtcactcat-gtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC------
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-------------------------------------------gtaagcacctagatttatcccattcattgctgt--tgcctcgtgttcctcatcatttgtgtttatgtattaaaagtaataaca-tcattaacagGATGTCTCCACATATGGGTGCTTGCATTGCTGTAGAGGCCATTTCAATTCTTGAGAAGCTCCATTCTAAAGG
upper sequence: GRMZM2G458035_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 6
ggtatgttgtttatggtatttcagctgtatttaattcgatggggcaggcataagtatcttccattcttttttatggtatcttttgtcactcatgtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC------
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------------gtaagatttgtaccctccct--tttgttagtataggt-tcacttttaatagctgcaatttatttaaactctt------cctatataagcccca----ttaacattttag---ttctggacagAATGTCACCAAATATGGTTGCGTGCATTGCAGTAGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGG
upper sequence: GRMZM2G458035_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 6
ggtatgttgtttatggtatttcagctgtatttaattcgatggggcaggcataagtatcttccattcttttttatg---gtatcttttgtcactcatgtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC------
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-------------------------------------gtaagaaatagaatctctctctctctctctctctcacacacacacacacacaagtggacattttttttcctgtttttaatttatttaaatcctgtaacagGATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggcataagtatcttccattcttttttatggtatcttttgtcactcatgtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC
attcttttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtatgttgtttatggtatttcagctgtatttaattcgatggggcaggcataagtatcttccattcttttttatggtatcttttgtcactcatgtatcagCTTCTAGACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - tgttgtt
- - - - - - - - - - tcagctg
- - - - - - - - - - - - - - - - - - - - - -gcaggca