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gtatcctgccgtgttcatacatttgactggcgatgaacataaatattatgataaatgatgttgaattgacttcatatacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCAATCTTGTGAGCCTGATTCTTCCTTTTATTGAGCTTGACCTTAAGGAAAT
species | Zea mays |
transcript | GRMZM2G457881_T03 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGCCTTGGAGTCTC ATATATCGAAGGTTGATGAAAATCAACTTGTGCEST: gi|211474511|gb|FK963000.1|FK963000
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGC
EST: TCCATCCTCAAGTATAGATAACTACCATCTGGTTGATGNCTTGGAGTCTC ATATATCGAAGGGTGATGAAAATCAACTTGTGCTCEST: gi|211474507|gb|FK962996.1|FK962996
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTC
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGCCTTGGAGTCTC ATATATCGAAGGTTGAEST: gi|211474508|gb|FK962997.1|FK962997
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGA
EST: CCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCYC ATATATCGAAGGTTGATGAAAATCAACEST: gi|211474510|gb|FK962999.1|FK962999
genomic: CC-ATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAAC
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGCCTTGGAGTCTC ATATATCGAAGGGTGATGAAAATCAACTEST: gi|149023564|gb|EE045895.2|EE045895
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAACT
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTC ATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCAEST: gi|211474517|gb|FK963006.1|FK963006
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCA
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGCCTTGGAGTCTC ATATATCGAAGGGTGATEST: gi|71322965|gb|DR798157.1|DR798157
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGAT
EST: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTC ATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCA
genomic: TCCATCCTCAAGTATAGATAACTACAATCTGGTTGATGGCTTGGAGTCTCgtatcctgcc ... atacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCA
cgatgaacataaatattatgataaatgatgttgaattgacttcatatacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCAATCTTGTGAGCCTGATTCTTCCTTTTATTGAGCTTGACCTTAAGGAAAT
taccttaat putative branch site
ataaatattatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctgccgtgttcatacatttgactggcgatgaacataaatattatgataaatgatgttgaattgacttcatatacgaatagATATATCGAAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCAATCTTGTGAGCCTGATTCTTCCTTTTATTGAGCTTGACCTTAAGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA