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...tgttccgtactttggtagttggctgcaatgactaacatacttttttgtatattttataacttatttatgtagattttcatattgtttgcctgctatacagAACTTGATTTTCGGTTCCCGGTGGGAGCTCCGTTACATGGCATTCAAGCATTCCTAAGAACTAATCAGCTCAAG
species | Zea mays |
transcript | GRMZM2G454952_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTGAAGGAACATACCCATACTTTTGTAAATAAAGGGGGCACGATTGGTG AACTTGATTTTCGGTTCCCGGTGGGAGCTCCCGT-ACATGGCATTCAAGCAEST: gi|211117183|gb|FK980637.1|FK980637
genomic: GGTGAAGGAACATACCCATACTTTTGTAAATAAAGGGGGCACGATTGGTGgtaagttcaa ... tgctatacagAACTTGATTTTCGGTTCCCGGTGGGAGCTCC-GTTACATGGCATTCAAGCA
EST: GGTGAAGGAACATACCCATACTTTTGTAAATAAAGGGGGCACGATTGGTG AACTTGATTTTCGGTTCCCGGTGGGAGCTCCGTTACATGGCATTCAAGCAT
genomic: GGTGAAGGAACATACCCATACTTTTGTAAATAAAGGGGGCACGATTGGTGgtaagttcaa ... tgctatacagAACTTGATTTTCGGTTCCCGGTGGGAGCTCCGTTACATGGCATTCAAGCAT
tgtatattttataacttatttatgtagattttcatattgtttgcctgctatacagAACTTGATTTTCGGTTCCCGGTGGGAGCTCCGTTACATGGCATTCAAGCATTCCTAAGAACTAATCAGCTCAAG
ttataac putative branch site (score: 354)
tttgcct putative PPT
attttataacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttccgtactttggtagttggctgcaatgactaacatacttttttgtatattttataacttatttatgtagattttcatattgtttgcctgctatacagAACTTGATTTTCGGTTCCCGGTGGGAGCTCCGTTACATGGCATTCAAGCATTCCTAAGAACTAATCAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - -gctgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc