1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcccttcactggatataaaactatgactactctaaaatcatcttatacggctatatatttgaagagtcacttatgctatttatacttaactccaatccagGGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAGAGATGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGA
species | Zea mays |
transcript | GRMZM2G452633_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA GGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAGEST: gi|71329761|gb|DR801593.1|DR801593
genomic: AATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAAgtaagttgct ... tccaatccagGGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAG
EST: AATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA GGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAG
genomic: AATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAAgtaagttgct ... tccaatccagGGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAG
tacggctatatatttgaagagtcacttatgctatttatacttaactccaatccagGGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAGAGATGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGA
acttaac putative branch site (score: 3)
tatttatacttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccttcactggatataaaactatgactactctaaaatcatcttatacggctatatatttgaagagtcacttatgctatttatacttaactccaatccagGGAGAAAAGGAAAACTCAAAAGCCACCAGCACAGCTCTCTTCCATCAAAAGAGATGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG