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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtagGTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAGTTTATAAGTGAATCATACCCAAATAATGAGTCTGGAATTATATACTGCT

Basic information

species Zea mays
transcript GRMZM2G451856_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451856_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 3'ss of exon 7
gtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaag---agtaaaacaggattt--tttgaaatcttgtttaccatgtagGTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAGTTTATAAGTGAATCATACCCAAATAATGAGTCTGGAATTATATACTGCT
                || |  |||       | |   | |      ||  |  |||||  || |   | ||| ||    ||| |   | ||||   || ||   |  ||| | ||  |||| | ||||||||| |||||||||||||| ||||||||||||||  |||| |||||||||||||| ||||| |||||||| ||||| ||| | |||||||
----------------aaatataagaaagtgcaatgcagaaga----atgaagatgtgaagagaacatttcactagtcttgtatagttgtatttgcctttaacattcttttgctattcagGTATTTGAGAAATCACCAGTTGGAAAGGTCGTCATTGATGAGATTGCAAACTTTATAAGTGAATCGTACCCGAATAATGAATCTGGGATTGTTTACTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348558|gb|DN215531.1|DN215531
EST:     GATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAG                         GTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAG
genomic: GATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcat ... taccatgtagGTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtagGTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAGTTTATAAGTGAATCATACCCAAATAATGAGTCTGGAATTATATACTGCT
                                      tcttgttt  CT-rich tract
                           attttttgaaatctt  TA-rich tract