Sequence
atgc intronic sequence ATGC exonic sequence...tttctgaaagtagactccaatacctaaattggcctgttaccgcatggtccattatgaacttgtagccatattgacattagaaatacacatgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G448913_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 15
---------------tttctgaaagtagactccaatacctaaattggcctgttaccgca-----tggtccattatgaacttgtagccatattgacattagaaatacacatgatgcaata---gGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
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gtatatattgtgtgctccatgcaag-aatttttattttgttaatgtattttctattgtagtattttgtgcactacaaatttatcccgttgtacat-ttacagGTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAA
upper sequence: GRMZM2G448913_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
-------------------------------tttctgaaagtagactccaataccta--aattggcctgttaccg-catggtccattatgaacttgtagccatattgacattagaaatacac-atgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
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gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttga-tgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
upper sequence: GRMZM2G448913_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 15
-----------------------------tttctgaaagtagactccaatacc----taaattggcctgttaccg-catggtccattatgaacttgtagccatattgacattagaaatacac-atgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
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gtattaactcttttcccttctagatttctagtttaaaaaaagaattgtgcattctttttaattgaactacgaggatcatgagacatcttga-tacataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtccattatgaacttgtagccatattgacattagaaatacacatgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
tattgac putative branch site (score: 2)
attagaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctgaaagtagactccaatacctaaattggcctgttaccgcatggtccattatgaacttgtagccatattgacattagaaatacacatgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
tttctga
- - - - - - - - - - - - - - -tggcctg
- - - - - - - - - - - - - - - - - - - -ccgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca