1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatcatcagcttaattgtaatataatgtcaaattatttcataatttagttctatggcaatcatatccttaagctatttatgcagtaagtttctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGTGGAATCGAAGAAGTTCAATGTGAGCTGGTATCTTTACACACATGAAAGT
species | Zea mays |
transcript | GRMZM2G444692_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTTCTGGACAGATTGCCCAACATGTGATGTTATACTTGTAAAAACAAG TGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGTEST: gi|211115211|gb|FL153545.1|FL153545
genomic: TTTTTCTGGACAGATTGCCCAACATGTGATGTTATACTTGTAAAAACAAGgtatgtgcaa ... tctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGT
EST: TTTTTCTGGACAGATTGCCCAACATGTGATGTTATACTTGTAAAAACAAG TGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGTEST: gi|87155752|gb|DY400541.1|DY400541
genomic: TTTTTCTGGACAGATTGCCCAACATGTGATGTTATACTTGTAAAAACAAGgtatgtgcaa ... tctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGT
EST: GATTGCCCAACATGTGATGTTATACTTGTAAAAACAAG TGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGT
genomic: GATTGCCCAACATGTGATGTTATACTTGTAAAAACAAGgtatgtgcaa ... tctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGT
tagttctatggcaatcatatccttaagctatttatgcagtaagtttctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGTGGAATCGAAGAAGTTCAATGTGAGCTGGTATCTTTACACACATGAAAGT
tttctgtt CT-rich tract
tatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatcagcttaattgtaatataatgtcaaattatttcataatttagttctatggcaatcatatccttaagctatttatgcagtaagtttctgttgcagTGGTCTTGATCTTCTTGCCTACGAGCCTCAGCCCCATGCTTTTCACTTGGTGGAATCGAAGAAGTTCAATGTGAGCTGGTATCTTTACACACATGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca