1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttccttatcttgaataactgttagattttgttattttgtgaatttgcaacatcattcttagtcatcattgcttatttgttaattcctttttctaactcatctcataattcatagacaatttttttaacaatcttctgatcttctccttggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTTTTCCTGGAAGTAGGGAAGATGTCCAAGTACAGCCATTGTGATTGGCTT
species | Zea mays |
transcript | GRMZM2G444643_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAG ATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|71767991|gb|DR965928.1|DR965928
genomic: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: TACGTGTTCAG ATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|78104262|gb|DV522680.1|DV522680
genomic: TACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAG ATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|71767992|gb|DR965929.1|DR965929
genomic: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAG ATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|78086490|gb|DV514883.1|DV514883
genomic: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: CATGTTGCTACGGTTGTTCTGATTGTTTTATCTTACGTGTTCCG ATTTGCTAGAGTTGGCTGTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|78104263|gb|DV522681.1|DV522681
genomic: CATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAG ATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTEST: gi|78086491|gb|DV514884.1|DV514884
genomic: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGT
EST: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAG ATTTGCTAGAGTTGGCT
genomic: TCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttcct ... ggtcaaccagATTTGCTAGAGTTGGCT
ataattcatagacaatttttttaacaatcttctgatcttctccttggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTTTTCCTGGAAGTAGGGAAGATGTCCAAGTACAGCCATTGTGATTGGCTT
tcttctccttggtc CT-rich tract
atagacaattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccttatcttgaataactgttagattttgttattttgtgaatttgcaacatcattcttagtcatcattgcttatttgttaattcctttttctaactcatctcataattcatagacaatttttttaacaatcttctgatcttctccttggtcaaccagATTTGCTAGAGTTGGCTCTATAGTATTGGCAATTCATGATGCAAGTGACGTTTTCCTGGAAGTAGGGAAGATGTCCAAGTACAGCCATTGTGATTGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG