1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaagttctctcttctaaaatgccgcccttgctattcttttctagtttcggaaaattttcaggtctcccgagcttcctgaactcaggattcacctgtatgctatttcgaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAGAATGCAATCTTCAGCCTGCCTGAAGGCCAAGAAAAAATGGTATGGCTGA
species | Zea mays |
transcript | GRMZM2G443453_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAA AATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAGEST: gi|89761846|gb|DY689697.1|DY689697
genomic: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagtt ... gaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
EST: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAA AATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
genomic: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagtt ... gaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
gtctcccgagcttcctgaactcaggattcacctgtatgctatttcgaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAGAATGCAATCTTCAGCCTGCCTGAAGGCCAAGAAAAAATGGTATGGCTGA
aaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagttctctcttctaaaatgccgcccttgctattcttttctagtttcggaaaattttcaggtctcccgagcttcctgaactcaggattcacctgtatgctatttcgaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAGAATGCAATCTTCAGCCTGCCTGAAGGCCAAGAAAAAATGGTATGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA