1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagtttggttcgtagggtttctcattgaatctgtgtaattttgattctgtgccaccctgtgacaaaatgcctgacagttcatctgtttgtttttttatagCTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG
species | Zea mays |
transcript | GRMZM2G442404_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTCTCGTGCTGTTATTTCAAAAGCTGGCAAAGGTATTGCATACTGGAA CTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGAEST: gi|149107130|gb|EE189019.2|EE189019
genomic: GATTCTCGTGCTGTTATTTCAAAAGCTGGCAAAGGTATTGCATACTGGAAgtaggtatct ... ttttttatagCTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGA
EST: GATTCTCGTGCTGTTATTTCAAAAGCTGGCAAAGGTATTGCATACTGGAA CTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGA
genomic: GATTCTCGTGCTGTTATTTCAAAAGCTGGCAAAGGTATTGCATACTGGAAgtaggtatct ... ttttttatagCTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGA
tctgtgccaccctgtgacaaaatgcctgacagttcatctgtttgtttttttatagCTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG
gcctgac putative branch site (score: 1)
tctgtttgttttttt putative PPT
tgtttgtttttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtttggttcgtagggtttctcattgaatctgtgtaattttgattctgtgccaccctgtgacaaaatgcctgacagttcatctgtttgtttttttatagCTATGGCACTTTCAGAAGATCACAAACCTAACAGGATTGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt