1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcgctttccttcacacttcgctctttccttccaagagcaataccaaatttaccaatctactaccaagtagttccgtttcagttttgacttttgacagtgcctaggctatactgaatactggttggttccataacgcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGCCTCTTCGAAAGAGGTTTCCCTGTG
species | Zea mays |
transcript | GRMZM2G437859_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGEST: gi|78084450|gb|DV512843.1|DV512843
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGEST: gi|76923378|gb|DV169457.1|DV169457
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGEST: gi|74238882|gb|DT646796.1|DT646796
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGEST: gi|5055765|gb|AI734652.1|AI734652
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: ATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGCTTGCGCTGCTCGGATTTGGEST: gi|71310987|gb|DR791795.1|DR791795
genomic: ATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGEST: gi|71438783|gb|DR819833.1|DR819833
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
EST: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAG ATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
genomic: AGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCAGgtcgctttcc ... gcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGG
tttgacagtgcctaggctatactgaatactggttggttccataacgcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGCCTCTTCGAAAGAGGTTTCCCTGTG
ccataac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgctttccttcacacttcgctctttccttccaagagcaataccaaatttaccaatctactaccaagtagttccgtttcagttttgacttttgacagtgcctaggctatactgaatactggttggttccataacgcaatgtcagATTCTTCAGCCCAGTGGGGATGACTCCAGTGGTTGCGCTGCTCGGATTTGGCCTCTTCGAAAGAGGTTTCCCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG