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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtttagctcattttgtcattataaagttgaacatattgtaccttctcttctgtacacgttttcatccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAAAATTGTAACTCCTATTCCTGCACCTCATAACCAGTGCTCAAGTAATAGC

Basic information

species Zea mays
transcript GRMZM2G437460_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211024421|gb|FL142654.1|FL142654
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAANATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211024420|gb|FL142653.1|FL142653
EST:     TTTGTTAATAGGAAGAAGCTNATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211071382|gb|FL173062.1|FL173062
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211071379|gb|FL173059.1|FL173059
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTAGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211071380|gb|FL173060.1|FL173060
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211024423|gb|FL142656.1|FL142656
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
EST: gi|211071384|gb|FL173064.1|FL173064
EST:     TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCG                         AGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA
genomic: TTTGTTAATAGGAAGAAGCTCATTTCTGGAGATGCAGTTCTCTTCCTTCGgtaggtgttt ... ccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagttgaacatattgtaccttctcttctgtacacgttttcatccttttccagAGGCGAAGATGGAGTGCTTCGACTGGGAGTGCGCCGAGCAGCCCAGCTAAAAATTGTAACTCCTATTCCTGCACCTCATAACCAGTGCTCAAGTAATAGC
                                    cgttttcatccttttc  CT-rich tract
         aacatatt  TA-rich tract