1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acttatggttgcaacttgcaaagcacacaatctagaaaaattagtattatgccgcaagtccaattgcaacaacctggtgatatattgaaatttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAAGGCAGTGGGCACCTGTTTACAGTGATCTCGCTCTGGGTCCTCAGAGGAA
species | Zea mays |
transcript | GRMZM2G435034_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCTGGAAGTGGATTTTTGATCCATGCAATTAATCTGTATCTCCGAC ATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAAEST: gi|71421989|gb|DR805607.1|DR805607
genomic: AGTTCCTGGAAGTGGATTTTTGATCCATGCAATTAATCTGTATCTCCGACgtaagtgcca ... tttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAA
EST: AGTTCCTGGAAGTGGATTTTTGATCCATGCAATTAATCTGTATCTCCGAC ATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAA
genomic: AGTTCCTGGAAGTGGATTTTTGATCCATGCAATTAATCTGTATCTCCGACgtaagtgcca ... tttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAA
attatgccgcaagtccaattgcaacaacctggtgatatattgaaatttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAAGGCAGTGGGCACCTGTTTACAGTGATCTCGCTCTGGGTCCTCAGAGGAA
tgatatattgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttatggttgcaacttgcaaagcacacaatctagaaaaattagtattatgccgcaagtccaattgcaacaacctggtgatatattgaaatttggtgcagATAAACCTCCAATCGAGGAATTACATCAGTTTTTGGAGTTCCAGCTTCCAAGGCAGTGGGCACCTGTTTACAGTGATCTCGCTCTGGGTCCTCAGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - -tggttgc
- - - - - - -acttgca
- - - - - - - - - - - gcacaca
- - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctggtg