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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctgctgctgctgccatcatttatattgcagcgactcgtgtgtcattgtcaagtcgaacgtcgttacagggtgggtgtactactacacgccgtgagtctctgaagaaattcgcttccaatccaactgcagggatgctgacgagcagGCTGGCCAAACACAGAACGCGGCGTCGGCTGTATGAAGTCTGGGCCTGTCCTGTCACAGAA

Basic information

species Zea mays
transcript GRMZM2G431006_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G431006_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g65590.1 (Oryza sativa), 3'ss of exon 5
gctgctgctgctgccatcatttatattgcagcgactcgtgtgtcattgtcaagtcgaacgtcgttacagggtgggtgtactactacacgccgtgagtctctgaagaaattcgcttccaatccaactgcagggatgctgacgagcagGCTGGCCAAACACAGAACGCGGC-----------GTCGGCTGTATGAAGTCTGGGCCTGTCCTGTCACAGAA
        |  ||| | |||  | |   ||   | |  |    |||| |    ||   |     || |   |        |  |      ||||| |   |||| |||||  | |          ||||||||||||||||||||||||||||||  |||| || || |           |||||||| |||||||| || ||||| ||||| |||||
-------gtaatgc-accatgcaaa---cacaaattaatacaccattat----tcatgctcgaataaataataatctcgatcttgt---tcgtgaatgaatgaacaaattttcgt----------tgcagGGATGCTGACGAGCAGGCTGGCCAAGTACAGGACACGACCGAGGGTGTACGTCGGCTGCATGAAGTCCGGACCTGTTCTGTCGCAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtctctgaagaaattcgcttccaatccaactgcagggatgctgacgagcagGCTGGCCAAACACAGAACGCGGCGTCGGCTGTATGAAGTCTGGGCCTGTCCTGTCACAGAA
                                          tgctgac  putative branch site (score: 2)
           aagaaatt  TA-rich tract