1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catttgagttcatatcctgttacccttatttggtttacatgacaggctaagttatcatttatcttgcatacatttgcatgacatttggtttacataacagGCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATCAAACTAATGATCCAAAGCAACATGTTTAAGTACCTGGGGATTCTGCTTG
species | Zea mays |
transcript | GRMZM2G429113_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTTATTCTTGGATCTCCTGGAGCTGGAACAAGCACCATATTTAAGCAG GCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATCEST: gi|148931788|gb|EC875075.2|EC875075
genomic: TTCTTATTCTTGGATCTCCTGGAGCTGGAACAAGCACCATATTTAAGCAGgtatcaccaa ... tacataacagGCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATC
EST: TTCTTATTCTTGGATCTCCTGGAGCTGGAACAAGCACCATATTTAAGCAG GCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTGGAGAATATC
genomic: TTCTTATTCTTGGATCTCCTGGAGCTGGAACAAGCACCATATTTAAGCAGgtatcaccaa ... tacataacagGCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATC
gctaagttatcatttatcttgcatacatttgcatgacatttggtttacataacagGCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATCAAACTAATGATCCAAAGCAACATGTTTAAGTACCTGGGGATTCTGCTTG
ttatcatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgagttcatatcctgttacccttatttggtttacatgacaggctaagttatcatttatcttgcatacatttgcatgacatttggtttacataacagGCTAAGTTGTTATACGGCAATAGATTTACTGATGAGGAACTTGAGAATATCAAACTAATGATCCAAAGCAACATGTTTAAGTACCTGGGGATTCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - ttcatat
- - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - -catgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga