1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttttatgtcttgtcagcatcgactttctgctattatgctaattccagaatccagatctaacatagttctcttatatttgcactatataattgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCTTGAAGTTGAAAAAACACCATG
species | Zea mays |
transcript | GRMZM2G428964_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|37377337|gb|CF625265.1|CF625265
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|6403330|gb|AW171805.1|AW171805
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|50330549|gb|CO525675.1|CO525675
genomic: CAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|78121376|gb|DV539760.1|DV539760
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|76289755|gb|DV029323.1|DV029323
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|71445933|gb|DR826983.1|DR826983
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|71324440|gb|DR798920.1|DR798920
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCEST: gi|89246796|gb|DY618583.1|DY618583
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
EST: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAG GATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
genomic: CTCAGACATGGAAGGCTTACTTTGGGCTAATGCGAAGTGAAACACCAAAGgtttgtcgct ... attgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCC
ccagaatccagatctaacatagttctcttatatttgcactatataattgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCTTGAAGTTGAAAAAACACCATG
atctaac putative branch site (score: 26)
ttatatttgcactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttatgtcttgtcagcatcgactttctgctattatgctaattccagaatccagatctaacatagttctcttatatttgcactatataattgttacagGATGATAGCAGACAAGCTGCTTCAATTTTGTTCCCTGACAAAGATCAGTCCTTGAAGTTGAAAAAACACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - -cagcatc
- - - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacta