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...ttccttctattccttctgaggcgttgtctgcttttgtgtattatcttgactgacagatctagtgggtaattaacattataaaatttcggtgatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA
species | Zea mays |
transcript | GRMZM2G426275_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGEST: gi|148986617|gb|EE030388.2|EE030388
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGG
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526749|gb|FL258558.1|FL258558
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211529739|gb|FL258565.1|FL258565
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526751|gb|FL258560.1|FL258560
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211529737|gb|FL258563.1|FL258563
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|149082839|gb|EE172063.2|EE172063
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526747|gb|FL258556.1|FL258556
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGAEST: gi|211529741|gb|FL258567.1|FL258567
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526748|gb|FL258557.1|FL258557
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGACTTTGATAAEST: gi|211526745|gb|FL258554.1|FL258554
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211529736|gb|FL258562.1|FL258562
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526750|gb|FL258559.1|FL258559
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|71439957|gb|DR821007.1|DR821007
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211526744|gb|FL258553.1|FL258553
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|211529738|gb|FL258564.1|FL258564
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTWCGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGAEST: gi|76285204|gb|DV024772.1|DV024772
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAEST: gi|74244431|gb|DT652345.1|DT652345
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
EST: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
genomic: CTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAGgtacaaacac ... gatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAA
ttgactgacagatctagtgggtaattaacattataaaatttcggtgatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA
aattaac putative branch site (score: 2)
taattaacattataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttctattccttctgaggcgttgtctgcttttgtgtattatcttgactgacagatctagtgggtaattaacattataaaatttcggtgatgcaacagAGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT