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...gtcttggatgtataaaggcaaaatgtaagaaagcataattttgtttcattgcattatttttgtttgtgttcaatccttggtgaagagttgtttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGTCTGTTGCCACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCA
species | Zea mays |
transcript | GRMZM2G425377_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAG GGTTTGGTTTTTCTGAGATTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGEST: gi|26457484|gb|CA829067.1|CA829067
genomic: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAGgtatggtttt ... tttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
EST: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAG GGTTTGGTTTTTCTGAGATTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGEST: gi|38687323|gb|CK144354.1|CK144354
genomic: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAGgtatggtttt ... tttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
EST: GGATGCTAGTAAAG GGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGEST: gi|160481508|gb|EY254340.1|EY254340
genomic: GGATGCTAGTAAAGgtatggtttt ... tttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
EST: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAG GGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGEST: gi|160481532|gb|EY254364.1|EY254364
genomic: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAGgtatggtttt ... tttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
EST: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAG GGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
genomic: TGACATGGATCCTAGGGACAACTTGGGGCGATGCATGGATGCTAGTAAAGgtatggtttt ... tttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTG
tcattgcattatttttgtttgtgttcaatccttggtgaagagttgtttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGTCTGTTGCCACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCA
tttgttct CT-rich tract
attatttttgtttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttggatgtataaaggcaaaatgtaagaaagcataattttgtttcattgcattatttttgtttgtgttcaatccttggtgaagagttgtttgttctagGGTTTGGTTTTTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGTCTGTTGCCACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -ttggatg
- - - - - - - - - - - - gtaagaaa
- - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggtg