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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccactcatgtggaaacctccggcactgggtctaccctttattgaaaagtgcaagttgctaattttagttcgttgtgacaagttccctgatgattctgtagGTAGTTGTAAATCAATCATCTTCTGCCAGAGTTAGAAGGGATGTTGCAGCACGTGCTATGCAGGGTTGGCATGCTCACCGCCTCCTTGCCAATGGCACTT

Basic information

species Zea mays
transcript GRMZM2G421899_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 5
ccactcatgtggaaac-ctccggcactgggtctaccct-ttattgaaaagtgcaagttgctaattttagttcgttgtgacaagttccctgatgattctgtagGTAGTTGTAAATCAATCATCTTCTGCCAGAGTTAGAAGGGATGTTGCAGCACGTGCTATGCAGGGTTGGCATGCTCACCGCCTCCTTGCCAATGGCACTT
  |    |||||     |   |   |      |    | || | ||   ||| ||  | ||| |||||| | | | |||||||||   | |      || || | | | | |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| |||||| |||||||||  |
-aagatgtgtggtgttgcgttgttgccaaaagtgttttcttgtcgatgcgtgtaaactactagttttagctagct-tgacaagtttgtttactgccttgcagATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAGCGCGTGCTATGCAGGGTTGGCATGCTCACCGTCTCCTTACCAATGGCATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtgcaagttgctaattttagttcgttgtgacaagttccctgatgattctgtagGTAGTTGTAAATCAATCATCTTCTGCCAGAGTTAGAAGGGATGTTGCAGCACGTGCTATGCAGGGTTGGCATGCTCACCGCCTCCTTGCCAATGGCACTT
             taattttagtt  TA-rich tract