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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttagttgtcttcagatcttactatatcttttaatatcattcttttgctatcatttaacatgtaatggctattcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG

Basic information

species Zea mays
transcript GRMZM2G421857_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 3
gtttgttttagttgtcttcagatcttactatatcttttaatatcatt--cttttgctatcatttaacatgtaatggctattcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG
||   |||| ||  | |    ||   |||  |||| | ||    | |   |||||||    |||||||  ||| || ||| ||    ||||| || || ||||| ||||||||||| |||||||| ||||||||||| || ||||||
gtgcttttttgtcattt----attaaactg-atctgtcaagcgtacttgtttttgcttgtttttaacacataaaggttatgcctgcacagCCCCTGTCGGTTGAGTTGGGACCTGGTATTCTTGGGAACATTTTTGATGGGATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649012|gb|BM497831.1|BM497831
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32838516|gb|CD978194.1|CD978194
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32925687|gb|CF030499.1|CF030499
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32921771|gb|CF026583.1|CF026583
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32924704|gb|CF029516.1|CF029516
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCAGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32925234|gb|CF030046.1|CF030046
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|211532167|gb|FL123441.1|FL123441
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|18649727|gb|BM498546.1|BM498546
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32848240|gb|CD987921.1|CD987921
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
EST: gi|32934325|gb|CF039137.1|CF039137
EST:     AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAG                         CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT
genomic: AGGAAACAGCTGGACTGATGGTTAATGACCCTGTATTGAGAACAAGAAAGgtttgtttta ... tcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttaatatcattcttttgctatcatttaacatgtaatggctattcccatgcagCCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG
                         atttaac  putative branch site (score: 3)
                                         ctattccc  putative PPT
     aatatcattctttt  TA-rich tract