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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctatttagtgtaccatgcttatctttaagcaatgccatttttttgaactgacctatttgcttatacagCTTCTGCAACCATCACGTTTTCTCAGGGAAATTCCTGATCACCTTCTTGAGGTGCAG

Basic information

species Zea mays
transcript GRMZM2G421655_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421655_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 3'ss of exon 23
gtaggctatttagtgtaccatgcttatctttaagcaatgcc---atttttttgaactgacctatttgct-tatacagCTTCTGCAACCATCACGTTTTCTCAGGGAAATTCCTGATCACCTTCTTGAGGTGCAG
| |||  ||||  | ||   |  | ||| |||   | |  |   ||||   |||  | | |||||       |  |||| |||||||| ||||| || |||||||| ||||||| ||||||||||||||| |||
gcaggtgattt--tatattgtattcatccttataaagtatctagatttcactgacttaaactattactggcgtctagCTGCTGCAACCTTCACGCTTCCTCAGGGAGATTCCTGCTCACCTTCTTGAGGTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116822893|gb|EC866361.1|EC866361
EST:     CTCGGAAAAAGCTGTACATCTTGCATGTTACAATTGATTCTAACCGTCAG                         CTTCTGCAACCATCACGTTTACTCAGGGACAATTCCTGATCACCTTCTTGA
genomic: CTCGGAAAAAGCTGTACATCTTGCATGTTACAATTGATTCTAACCGTCAGgtaggctatt ... gcttatacagCTTCTGCAACCATCACGTTTTCTCAGGGA-AATTCCTGATCACCTTCTTGA
EST: gi|67025795|gb|CO454544.1|CO454544
EST:     CTCGGAAAAAGCTGTACATCTTGCATGTTACAATTGATTCTAACCGTCAG                         CTTCTGCAACCATCACGTTTTCTCAGGGAAATTCCTGATCACCTTCTTGAG
genomic: CTCGGAAAAAGCTGTACATCTTGCATGTTACAATTGATTCTAACCGTCAGgtaggctatt ... gcttatacagCTTCTGCAACCATCACGTTTTCTCAGGGAAATTCCTGATCACCTTCTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcttatctttaagcaatgccatttttttgaactgacctatttgcttatacagCTTCTGCAACCATCACGTTTTCTCAGGGAAATTCCTGATCACCTTCTTGAGGTGCAG
                                aactgac  putative branch site (score: 2)
                                          tttgctt  putative PPT
                       atttttttgaa  TA-rich tract