Sequence
atgc intronic sequence ATGC exonic sequencegtacatttatattttgccacaagttacttggtacttaaatgcaactattttatttagtgattacaataataaaatatgaatttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 3'ss of exon 4
gtacatttatattttgccacaagttacttggtacttaaat-gcaactattttatttagtgattacaataataaaatatgaatttgaa-tagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG---------------------------------------------------------------------------------
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gtacaactatattttgtaaca-gttgtggaatactaaagttaaggctaccttgtttagtaa--------atattctatgaatttgaaatagatgggcaaattctatgaattatttgaaatggatgcacatgttggggcaaaggagcttgatcttcagtatatgaaggtagtaaattctcttctgcttattcagTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACG
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT4G02070.2 (Arabidopsis thaliana), 3'ss of exon 4
gtacatttatattttgccacaagttacttggtacttaaatgcaactattttatttagtgattacaataataaaatatgaatttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG
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gtagaacgataattacttat---ttcgttataacttatttattgatgggagattctaggataa--atggtcttcttttgtggcaagcagATGGGTAAATTCTATGAGCTTTTTGAGATGGATGCACATGTCGGAGCTAAGGAACTGGATATACAATACATGAAG
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ29124 (Selaginella moellendorffii), 3'ss of exon 7
gtacatttatattttgccacaagttacttggtacttaaatgcaactattttatttagtgattacaataataaaatatgaatttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG
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---------------------------gtgatgatgcgatgc--ttatgcctgctagtgttta--gctgtgctgcatg---ctg--cagATGGGGAAGTTCTACGAAATGTTTGAGATGGATGCACATGTTGGAGCTCAAGACCTTGATCTGCAGTACATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71437976|gb|DR819026.1|DR819026EST: AATGGTGGGAATTCAAATCACAGCACATGGATAAGGTTCTGTTTTTCAAG ATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAG
genomic: AATGGTGGGAATTCAAATCACAGCACATGGATAAGGTTCTGTTTTTCAAGgtacatttat ... atttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaatgcaactattttatttagtgattacaataataaaatatgaatttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG
tattttatttagtgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatttatattttgccacaagttacttggtacttaaatgcaactattttatttagtgattacaataataaaatatgaatttgaatagATGGGCAAATTCTACGAACTATTTGAGATGGATGCACATGTTGGAGCAAAGGATCTTGATCTTCAGTACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG