Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaaaagaaatgctactgcattaaagcattattgcacacatcaaaagcgagttgcagccgtaaactgttctgattttctgatggccatcaactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAGGCTATCTTCATATTTGTGAAA

Basic information

species Zea mays
transcript GRMZM2G419694_T05
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g53240.2 (Oryza sativa), 3'ss of exon 5
acaaaaagaaatgctactgcattaaagcattattgcac---acatcaaa-agcgagttgcagccgtaaactgttctgattttctgatggccatcaactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAGGCTATCTTCATATTTGTGAAA
        || |  |  |||  | || | ||| | ||    |||||||  | | |     |       |   | || | |  || |||    || | | |  |||||||| |||||||| |||||||| || ||||| || || ||||||||| ||||| | |||||||||||| ||||||| || |||||||| |||||||| 
--gctcgaaacttttgttgctctgaaactttaatacatgttacatcaagtatcaatcaatattaccgtatcatccttagtagcttatgattttctaatat--agGTACCTGGTCCCTGCTGATCTTACCGTTGGGCAGTTTGTCTATGTTGTTCGGAAGCGGATCAAGCTCAGTCCTGAGAAAGCAATCTTCATCTTTGTGAAG

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 4
lower sequence: Vv19s0090g00580.t01 (Vitis vinifera), 3'ss of exon 4
acaaaaagaaatgctactgcattaaagcattattgcacacatcaaaagcgagtt--gcag------ccgtaaactgttctgattttctgatggccatcaactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAGGCTATCTTCATATTTGTGAAA
          ||| |    ||||  |  ||| |   | |    |||  |  |||  || |       |  | | | | |||| || ||  |   ||| | |  ||||| || || || ||||| ||||| || || ||||| || || |||||  |  ||||||| |||||||| ||||||||||||||||| ||||| ||||| || 
------tagtatgttttcacattcgattattgtcttatatggtaaattcctgtttagctgattttatcaaatattatcctgagttcctact--tcatgatcaatgcagATATCTGGTTCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTGATCCGGAAGAGGATCAAGCTTAGTGCTGAGAAGGCTATTTTCATTTTTGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15057145|gb|BI361117.1|BI361117
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|76287758|gb|DV027326.1|DV027326
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211258766|gb|FL031018.1|FL031018
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60352182|gb|DN219155.1|DN219155
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|14244237|gb|BG842211.2|BG842211
EST:     ATTGTTGAAAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|28986825|gb|CB351328.1|CB351328
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211258765|gb|FL031017.1|FL031017
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTTGT-A
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTT-GTTA
EST: gi|211027787|gb|FL306180.1|FL306180
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|28986861|gb|CB351346.1|CB351346
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18176526|gb|BM351459.1|BM351459
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027791|gb|FL306184.1|FL306184
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTA
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTA
EST: gi|211030233|gb|FL306195.1|FL306195
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027797|gb|FL306190.1|FL306190
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211258760|gb|FL031012.1|FL031012
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027796|gb|FL306189.1|FL306189
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18166449|gb|BM336288.1|BM336288
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGGAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027786|gb|FL306179.1|FL306179
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211030232|gb|FL306194.1|FL306194
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTWGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|15426911|gb|BI542733.1|BI542733
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGGCAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|17929998|gb|BM266958.1|BM266958
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|91871992|gb|EB401949.1|EB401949
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60358602|gb|DN225575.1|DN225575
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18170724|gb|BM340564.1|BM340564
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60339197|gb|DN206170.1|DN206170
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAGTTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|91871993|gb|EB401950.1|EB401950
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCCTCGTCCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTT
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACC-TCGTCCC-TGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTT
EST: gi|17931360|gb|BM268326.1|BM268326
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211496223|gb|FL382412.1|FL382412
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTA
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTA
EST: gi|4226208|gb|AI396315.1|AI396315
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|17929854|gb|BM266814.1|BM266814
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|17931560|gb|BM268520.1|BM268520
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027785|gb|FL306178.1|FL306178
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTT
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTT
EST: gi|211258763|gb|FL031015.1|FL031015
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211258768|gb|FL031020.1|FL031020
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027792|gb|FL306185.1|FL306185
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|88749526|gb|DY533667.1|DY533667
EST:     ATTGTTGAAAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027798|gb|FL306191.1|FL306191
EST:     ATTGTTGATAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18174890|gb|BM350278.1|BM350278
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027790|gb|FL306183.1|FL306183
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18168345|gb|BM338185.1|BM338185
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211030231|gb|FL306193.1|FL306193
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTWG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|45847736|gb|CN071679.1|CN071679
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027794|gb|FL306187.1|FL306187
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCT-ACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTYAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027793|gb|FL306186.1|FL306186
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027788|gb|FL306181.1|FL306181
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18167465|gb|BM337304.1|BM337304
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|18162674|gb|BM332513.1|BM332513
EST:     TCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: TCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|16922807|gb|BM075799.1|BM075799
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|15057263|gb|BI361235.1|BI361235
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60349765|gb|DN216738.1|DN216738
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|17931323|gb|BM268289.1|BM268289
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|78079144|gb|DV507556.1|DV507556
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|15177541|gb|BI398480.1|BI398480
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGNTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|16922901|gb|BM075893.1|BM075893
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60353565|gb|DN220538.1|DN220538
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|91048098|gb|EB158516.1|EB158516
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|211027789|gb|FL306182.1|FL306182
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
EST: gi|60352183|gb|DN219156.1|DN219156
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcgagttgcagccgtaaactgttctgattttctgatggccatcaactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAGGCTATCTTCATATTTGTGAAA
                               ttctgat  putative branch site (score: 3)
                          tgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaaaaagaaatgctactgcattaaagcattattgcacacatcaaaagcgagttgcagccgtaaactgttctgattttctgatggccatcaactttgcagGTACCTCGTCCCTGCAGATCTTACAGTCGGGCAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAGGCTATCTTCATATTTGTGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA