1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcaggtgaatctaaattcagttttctgatgcggcggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGTATCACCAGATGCTACCCTACGTGAAGGCGCACCTGAAGAGCTGGGGCA
species | Zea mays |
transcript | GRMZM2G416817_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGEST: gi|19822757|gb|BQ048781.1|BQ048781
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGEST: gi|20301615|gb|BQ164558.1|BQ164558
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGEST: gi|149070613|gb|EE159022.2|EE159022
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG GAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCCAGGGGATG
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
agagcagccgagcaggtgaatctaaattcagttttctgatgcggcggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGTATCACCAGATGCTACCCTACGTGAAGGCGCACCTGAAGAGCTGGGGCA
ttctgat putative branch site (score: 3)
aatctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcaggtgaatctaaattcagttttctgatgcggcggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATGTATCACCAGATGCTACCCTACGTGAAGGCGCACCTGAAGAGCTGGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT