1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttttgttaattgctcatattgtttctctacatcttaaattttccttggcctgaaaataatacttctagtttgttcaatgacctaaattatttgttgcagTATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAAGAGAGAATATCAAGAATACCTCTCTTAGTGATTCTTCCAACATAATGGTACAAAGTCCTCT
species | Zea mays |
transcript | GRMZM2G416684_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGATCTCCATCTGGATCAGCATTTGAATCTCACACTGCCACTGATGAAG TATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAAGAGAGAATATCAEST: gi|211351687|gb|FL202419.1|FL202419
genomic: TGGATCTCCATCTGGATCAGCATTTGAATCTCACACTGCCACTGATGAAGgtttgcttat ... tttgttgcagTATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAAGAGAGAATATCA
EST: TGGATCTCCATCTGGATCAGCATTTGAATCTCACACTGCCACTGATGAAG TATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAASCAGAGAATATC
genomic: TGGATCTCCATCTGGATCAGCATTTGAATCTCACACTGCCACTGATGAAGgtttgcttat ... tttgttgcagTATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAA-GAGAGAATATC
ttggcctgaaaataatacttctagtttgttcaatgacctaaattatttgttgcagTATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAAGAGAGAATATCAAGAATACCTCTCTTAGTGATTCTTCCAACATAATGGTACAAAGTCCTCT
acctaaa putative branch site (score: 17)
aaaataatacttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgttaattgctcatattgtttctctacatcttaaattttccttggcctgaaaataatacttctagtttgttcaatgacctaaattatttgttgcagTATCAATGAGGCCACAGCAGATGAGTGGCTCTTCATCAAGAGAGAATATCAAGAATACCTCTCTTAGTGATTCTTCCAACATAATGGTACAAAGTCCTCT
-ttttgtt
- - - - - -tgctcat
- - - - - - - - - - tgtttct
- - - - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - gcctgaa