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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatctcgtctgtatatgtatgcagtgccattttaattgagtttcatggattttgtcttcattatcttatgtttgtgatgcaaccctgcttcctttgcagGAGGCCTGCTCTCATCTTCCCAAGATCTCTAGCAAGGAAACACATCCAAAGATAGCACAAGTTCTTCTGGAACGACAAAAATATGATATGGCACTTCTTG

Basic information

species Zea mays
transcript GRMZM2G416426_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416426_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g52700.1 (Oryza sativa), 3'ss of exon 6
---gaatctcgtctgtatatgtatgcagtgccattttaattgagtttc-atggattttgtcttcattatcttatgtttgtgatgcaaccctgcttcctttgcagGAGGCCTGCTCTCATCTTCCCAAGATCTCTAGCAAGGAAACACATCCAAAGATAGCACAAGTTCTTCTGGAACGACAAAAATATGATATGGCACTTCTTG
   || |||  | |||   | ||   |  | | |  |  || |  |   ||   ||      | || || || | ||| | ||||| | || ||  || |||||||||| |||||||  ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| || || |||  |||| |||||||  |||
cttgagtcttatttgtggttctaactaaagacttgcttgttcacctaagatttcttgaagtctaatcattttttattt-tcatgca-ctctact--ctgtgcagGAGGCATGCTCTCTACTTCCCAAGATTTCTTGCAAGGAAACACATCCGAAGATAGCACAAGTTCTTCTGGAGCGTCATAAACCTGATGTGGCACTGGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggattttgtcttcattatcttatgtttgtgatgcaaccctgcttcctttgcagGAGGCCTGCTCTCATCTTCCCAAGATCTCTAGCAAGGAAACACATCCAAAGATAGCACAAGTTCTTCTGGAACGACAAAAATATGATATGGCACTTCTTG
                                      ccctgcttcctttgc  CT-rich tract
               attatcttatgttt  TA-rich tract