1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagagttctttttctcccatttcaaccttcgagatttaccacctgctagcattatcatttcatccatcttcatcaaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCGGGGACGTTGAGCATGCTAGCTGCTTTTGGAAATTGCATTGCGTGCATC
species | Zea mays |
transcript | GRMZM2G416061_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGCGCGCGGTCGGGGTCEST: gi|211405279|gb|FL027503.1|FL027503
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGACGTGGGCGTGGCCGTGGTCGTGGGCGCGEST: gi|211405278|gb|FL027502.1|FL027502
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCG
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCEST: gi|67011942|gb|CO440691.1|CO440691
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGACGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCEST: gi|26557688|gb|CA829923.1|CA829923
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCEST: gi|211405280|gb|FL027504.1|FL027504
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAARAAGCCTACTTCTG GGAAGCCCTTGGGCCGTGGGCGTGEST: gi|32847843|gb|CD987524.1|CD987524
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTG
EST: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTG GGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
genomic: TTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcagagttc ... caaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTC
tcgagatttaccacctgctagcattatcatttcatccatcttcatcaaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCGGGGACGTTGAGCATGCTAGCTGCTTTTGGAAATTGCATTGCGTGCATC
tcttcatc CT-rich tract
attatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagagttctttttctcccatttcaaccttcgagatttaccacctgctagcattatcatttcatccatcttcatcaaaaaccagGGAAGCCCTTGGGCCGTGGGCGTGGCCGTGGTCGTGGGCGCGGTCGGGGTCGGGGACGTTGAGCATGCTAGCTGCTTTTGGAAATTGCATTGCGTGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT