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...gcctgtattggtgaattcaaatagatatctatgtatatggggaaaagtcagcaatcctgttttcttttctggttataaaccttgtttcgactaatcacagATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGATCTCGGGAGAATACCCTGTATAATGCTCTTTGGGTTGCTCAGGCGCTGTTGCG
species | Zea mays |
transcript | GRMZM2G414496_T08 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTGATAGACCTACTGCAAAACTCATCAAGGATTTTTCTTTGATAGAAG ATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGATCTCEST: gi|211344604|gb|FK981658.1|FK981658
genomic: ACTTGATAGACCTACTGCAAAACTCATCAAGGATTTTTCTTTGATAGAAGgtaataccca ... ctaatcacagATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGATCTC
EST: CTTGATAGACCTACTGCAAAACTCATCAAGGATTTTDTCTTTGATAGAAG ATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGAT
genomic: CTTGATAGACCTACTGCAAAACTCATCAAGGATTTT-TCTTTGATAGAAGgtaataccca ... ctaatcacagATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGAT
agtcagcaatcctgttttcttttctggttataaaccttgtttcgactaatcacagATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGATCTCGGGAGAATACCCTGTATAATGCTCTTTGGGTTGCTCAGGCGCTGTTGCG
gactaat putative branch site (score: 2)
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctgtattggtgaattcaaatagatatctatgtatatggggaaaagtcagcaatcctgttttcttttctggttataaaccttgtttcgactaatcacagATTCTTTTATGAGCACCATTGGAAGTCGATATGGAATAACAGCTGGATCTCGGGAGAATACCCTGTATAATGCTCTTTGGGTTGCTCAGGCGCTGTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
gcctgta
- - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttt