1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaagaacatatccagcccttgctgtgcatgacctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
species | Zea mays |
transcript | GRMZM2G413857_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAEST: gi|19351457|gb|BM895989.1|BM895989
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTA
EST: GACGAGAGGCAGGGAGCTAATGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATEST: gi|87152801|gb|DY397590.1|DY397590
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
EST: GACGAGAGGCAGGGAGCTAATGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATEST: gi|67023933|gb|CO452682.1|CO452682
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
EST: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG GCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
genomic: GACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAGgtaacaagaa ... tgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGAT
ctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
agctgac putative branch site (score: 3)
ctctgtcc putative PPT
ataaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaagaacatatccagcccttgctgtgcatgacctgaacagataaagaaatgggggatacatcaaaagctgacgactctgtccatcagGCGGCATGACTTAACGGAATCGCTGAAGAAGCTCAAGTGCCGGACGCTGATCTTTGTTGGAGAAAACTCACAGTTCCATGCGGACGCTGTCCACATGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA