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...tgaaacctcaggtgtcctgaatatgtcaagcatccctctggttctgaaaaatttcaacaatccagcattaaagagtgccatttgtgccttttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACATTATCGATGTCTCTGGTGGGGACAAGATACCAAGAAAAGGTGGCCCTGG
species | Zea mays |
transcript | GRMZM2G413652_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGTGAATCTGGAGGAG ATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACAEST: gi|161407584|gb|DW042408.1|DW042408
genomic: ACTCTGTGAATCTGGAGGAGgtatattttt ... ttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACA
EST: ACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG ATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACAEST: gi|211452606|gb|FL416418.1|FL416418
genomic: ACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGgtatattttt ... ttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACA
EST: TATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGEST: gi|60358340|gb|DN225313.1|DN225313
genomic: TATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
EST: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGEST: gi|8577258|gb|BE129895.1|BE129895
genomic: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
EST: GCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG ATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACAEST: gi|94473481|gb|EB702439.1|EB702439
genomic: GCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGgtatattttt ... ttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACA
EST: AAGACATCAGCATAAATTTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGATGATTTGCTACTCTGTGAATCTGGAGGAGEST: gi|87156249|gb|DY401038.1|DY401038
genomic: AAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
EST: GTGAATCTGGAGGAG ATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACAEST: gi|21843537|gb|BQ704118.1|BQ704118
genomic: GTGAATCTGGAGGAGgtatattttt ... ttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACA
EST: GTGAATCTGGAGGAG ATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACAEST: gi|20300761|gb|BQ163704.1|BQ163704
genomic: GTGAATCTGGAGGAGgtatattttt ... ttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACA
EST: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCAAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGEST: gi|101386125|gb|EB815103.1|EB815103
genomic: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
EST: TCCTCGGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGGAGEST: gi|20300389|gb|BQ163332.1|BQ163332
genomic: TCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGA-GGAG
EST: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCAAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAGEST: gi|50326358|gb|CO521484.1|CO521484
genomic: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
EST: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
genomic: ATGCGGCTATTCGCGAAGACATCAGCATAAATCTTGGTCCTCTGGAGGAGCTATCGAACTTGTACAAAGCTGATTTGCTACTCTGTGAATCTGGAGGAG
gaaaaatttcaacaatccagcattaaagagtgccatttgtgccttttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACATTATCGATGTCTCTGGTGGGGACAAGATACCAAGAAAAGGTGGCCCTGG
tttgtgccttttcc CT-rich tract
attaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaacctcaggtgtcctgaatatgtcaagcatccctctggttctgaaaaatttcaacaatccagcattaaagagtgccatttgtgccttttccatgcagATAACTTGGCAGCTAACTTCAGCAGAGAATTAGCAGACTACATAATCTACATTATCGATGTCTCTGGTGGGGACAAGATACCAAGAAAAGGTGGCCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA