1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgtttccatctctttttctatcttgttctcatttgctaacattggatcaagtttttgacacgccccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCAATTTACGGATAGAGCTGAGTGCTGATGACATAGAATACATGTATCAGA
species | Zea mays |
transcript | GRMZM2G412911_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCA GATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCEST: gi|26457309|gb|CA828892.1|CA828892
genomic: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCAgtaatgtttc ... ccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGC
EST: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCA GATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCEST: gi|76915075|gb|DV165808.1|DV165808
genomic: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCAgtaatgtttc ... ccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGC
EST: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCA GATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCEST: gi|76936583|gb|DV174787.1|DV174787
genomic: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCAgtaatgtttc ... ccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGC
EST: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCA GATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGC
genomic: AGCCCCAATATGTTGTGCAGGGAAGGTTTCAGAGGATCAATCAACATCCAgtaatgtttc ... ccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGC
atcttgttctcatttgctaacattggatcaagtttttgacacgccccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCAATTTACGGATAGAGCTGAGTGCTGATGACATAGAATACATGTATCAGA
cgccccct CT-rich tract
aagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttccatctctttttctatcttgttctcatttgctaacattggatcaagtttttgacacgccccctacacagGATGCAAGTGTTCATTCTTTTTCTATTGGAGTGACAGAAGTTATTAATAGCAATTTACGGATAGAGCTGAGTGCTGATGACATAGAATACATGTATCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT