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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtgggcactgtgaaagctctttggccactcacagaagccctagaataagaatattgctaatgatgagaagtaactaaaacaatatcatacaattgcagTGCTCTCTCCAATAGTTTGGAGGGTATGCTCCTTGGAAGATTTTTGGTAGGAACAGGGATGGGATTGGGTCCACCAGTAGCTTCACTTTATATAACGGAG

Basic information

species Zea mays
transcript GRMZM2G412899_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412899_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 3'ss of exon 5
----------ttgtgggcactgtgaaagctctttggccactcacagaagccctagaataagaatattgctaatgatgagaagtaactaaaacaatatcatacaattgcagTGCTCTCTCCAATAGTTTGGAGGGTATGCTCCTTGGAAGATTTTTGGTAGGAACAGGGATGGGATTGGGTCCACCAGTAGCTTCACTTTATATAACGGAG
          ||| | ||     ||| |  || || |    |  ||     |       |  ||  || |  | ||   |  |  || ||  |  | |||    |||||| |||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| |||
cacctaatacttgagagctgccggaaggaactatgcctgaacttagttattcct-----atgattctgtt--tcattgaaccttcctgaagaagaaacatt---ttgcagCGCTCTCACCAATAGTCTGGAGGGTATGCTTCTTGGAAGATTTTTGGTTGGAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataagaatattgctaatgatgagaagtaactaaaacaatatcatacaattgcagTGCTCTCTCCAATAGTTTGGAGGGTATGCTCCTTGGAAGATTTTTGGTAGGAACAGGGATGGGATTGGGTCCACCAGTAGCTTCACTTTATATAACGGAG
                            aactaaa  putative branch site (score: 2)
                           taactaaaacaatat  TA-rich tract