1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgaaaaaatctcatgatttcaagcatgttagaccttgttgtaattgcataagttaattggtacgaatggaaaaagttactatttattttggtgtttcagGCGCTTCATGAATCAATATTTCTTGTTGATAGCTTGTCTGCAACTATGGTCACTTATCACTCCTGTAAATCCTGCAAGTACCTGGGGCCCACTTATATTT
species | Zea mays |
transcript | GRMZM2G411940_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTATACCTTATTGAACTTCGTGCCAAAAAACCTATGGGAACAGTTCAG GCGCTTCATGAATCAATATTTCTTGTTGATAGCTTGTCTGCAACTATGGTC
genomic: AAGTATACCTTATTGAACTTCGTGCCAAAAAACCTATGGGAACAGTTCAGgttcgtgact ... ggtgtttcagGCGCTTCATGAATCAATATTTCTTGTTGATAGCTTGTCTGCAACTATGGTC
tgcataagttaattggtacgaatggaaaaagttactatttattttggtgtttcagGCGCTTCATGAATCAATATTTCTTGTTGATAGCTTGTCTGCAACTATGGTCACTTATCACTCCTGTAAATCCTGCAAGTACCTGGGGCCCACTTATATTT
agttaat putative branch site (score: 13)
aaaaagttactattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaaaaaatctcatgatttcaagcatgttagaccttgttgtaattgcataagttaattggtacgaatggaaaaagttactatttattttggtgtttcagGCGCTTCATGAATCAATATTTCTTGTTGATAGCTTGTCTGCAACTATGGTCACTTATCACTCCTGTAAATCCTGCAAGTACCTGGGGCCCACTTATATTT
- -aaaaaat
- - - - - - catgatt
- - - - - - - - - - -aagcatg
- - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - -attgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaag