1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTGACTACATGCCTATTACTCGTGGTGAGAAGCGCTCAGTCGAGGTTGTGA
species | Zea mays |
transcript | GRMZM2G409407_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211266082|gb|FL031061.1|FL031061
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAAT GCCGGGGACTCTACTCGGGAAGAGCTTGCCACG-CCACCCAGGGTC-AGGEST: gi|211247720|gb|FL179850.1|FL179850
genomic: GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAA-Tgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGG-TCCAGG
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211456254|gb|FL273553.1|FL273553
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211129396|gb|FL066372.1|FL066372
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|78085923|gb|DV514316.1|DV514316
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211266087|gb|FL031066.1|FL031066
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCNCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGEST: gi|33091972|gb|CF051966.1|CF051966
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCG
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTAEST: gi|211263650|gb|FL031054.1|FL031054
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTA
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT GCCGGGGACTCTACTCCGGAGGAEST: gi|44900414|gb|CK826959.1|CK826959
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGA
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGCEST: gi|27522089|gb|CA989195.1|CA989195
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|32859116|gb|CD998797.1|CD998797
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|6973668|gb|AW438242.1|AW438242
genomic: GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|29946616|gb|CB816239.1|CB816239
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211266077|gb|FL031056.1|FL031056
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGEST: gi|7238188|gb|AW573410.1|AW573410
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAG
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|116829000|gb|EC863170.1|EC863170
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGCTEST: gi|78086900|gb|DV515293.1|DV515293
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|78180971|gb|DV551344.1|DV551344
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTEST: gi|211263645|gb|FL031049.1|FL031049
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT GCCGGGGACTCEST: gi|211266081|gb|FL031060.1|FL031060
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTC
EST: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT GCCGGGGACTCTA
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTA
gaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTGACTACATGCCTATTACTCGTGGTGAGAAGCGCTCAGTCGAGGTTGTGA
ttctaat putative branch site (score: 1897)
cctaccttc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGTGACTACATGCCTATTACTCGTGGTGAGAAGCGCTCAGTCGAGGTTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC