Sequence
atgc intronic sequence ATGC exonic sequence...ctaccaaccaagttatcactcagttctcagactaattgtgtttcttatttatctctaaattgatttgacagtattataataattttgctcctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGATATGCGTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G409265_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g40590.1 (Oryza sativa), 3'ss of exon 4
ctaccaaccaagttatcac-tcagt-tctcagactaattgtgtttctt--atttatct--ctaaattgatttgacagtattataataattttgctcctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGATATGCGTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTG
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----ccacgaaattgctgtatcagtattttggtgcagttaattaacctcaatttattcaactgtgttgagttgatactcatatcttaattt-gcatatacat-cagGGAAACGGGCTGATGAGAATTCTTTATGTTGCTGCATTTGCTGTCTCTGGATATGCTTCCACGGATTCTCGCCCCTGCAAACCTTTCAATCCATTGTTGG
upper sequence: GRMZM2G409265_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT4G22540.1 (Arabidopsis thaliana), 3'ss of exon 4
ctaccaaccaagttatcactcagttctcagactaattgtgtttcttatttatctctaaattgatttgacagtattataataattttgctcctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGATATGCGTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTG
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-------gtaagtga-caccaaagtctcttacttatcttgtacattactacattctg--tttatctta---tattgacttaaagcctattggataatcagGGGAATGGTCTCTTAAGAGCCTTAAATGTTGCTGCTTTTGCGGTCTCTGGATATGCTTCCACTGAAGGCAGGCATTGTAAGCCCTTCAATCCTTTGCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211525268|gb|FL432923.1|FL432923EST: AGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGA GGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGA
genomic: AGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgt ... ctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttatctctaaattgatttgacagtattataataattttgctcctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGATATGCGTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTG
ttttgctcct CT-rich tract
taaattgatttgacag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaccaaccaagttatcactcagttctcagactaattgtgtttcttatttatctctaaattgatttgacagtattataataattttgctcctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGATATGCGTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTG
- - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct