1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgggtcgataatctgctagccagctaggaatgtcaattcgctcagcttatgtcaaatgtgttatgatttgactgctgttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGTATCACAAGGATGACACAGGTCTTGCCAGGATTGTTGCCTTTGAGGTTA
species | Zea mays |
transcript | GRMZM2G409104_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|148965278|gb|EE016081.2|EE016081
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|89250725|gb|DY622511.1|DY622511
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCTTCAAGGGACAGTACTCAGGG AGCAAGGAAGA-AAGCATTTCATTCACAACCACTTCACATTTCEST: gi|101390012|gb|EB816938.1|EB816938
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTC
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCCGGG AGCAAGGAAGAGAAACATTTCATTCACAACCACTTCCCATTTCTGGTGAAGEST: gi|149013945|gb|EE043446.2|EE043446
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|149102922|gb|EE288273.2|EE288273
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|149096266|gb|EE181975.2|EE181975
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|91871094|gb|EB401239.1|EB401239
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGEST: gi|31353543|gb|CD437900.1|CD437900
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
EST: CTGTGTACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGG AGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
genomic: CTGTATACCAGCAAGGCGTGCATATCGGCATCAAGGGACAGTACTCAGGGgtgggtcgat ... gttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAG
gtcaattcgctcagcttatgtcaaatgtgttatgatttgactgctgttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGTATCACAAGGATGACACAGGTCTTGCCAGGATTGTTGCCTTTGAGGTTA
tgttgat putative branch site (score: 112)
ttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtcgataatctgctagccagctaggaatgtcaattcgctcagcttatgtcaaatgtgttatgatttgactgctgttgatgcagAGCAAGGAAGAGAAGCATTTCATTCACAACCACTTCACATTTCTGGTGAAGTATCACAAGGATGACACAGGTCTTGCCAGGATTGTTGCCTTTGAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG