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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactgcataccattgtgaaatgtcatatcattaacatctatcatcgtactccttggttactgagtattgacacttccatgtcgatcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGTGCCAGAAAGTGTGCATGCTACATGACTCAAGTTTTCTAGAAATTTGTTT

Basic information

species Zea mays
transcript GRMZM2G408989_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408989_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g45310.1 (Oryza sativa), 3'ss of exon 5
gtgaactgcataccattgtgaaatgtcatatcattaacatctatcatcgtactccttggttactgagtattgacacttccatgtcgatcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGTGCCAGAAAGTGTGCATGCTACATGACTCAAGTTTTCTAGAAATTTGTTT-----
|| ||||| ||||  |||| |||  |||| |                |  ||||  |||       ||| ||||| |||||||||| |   ||||||||||||||||| |||||||| |||||||||||||||   | ||||| |  |||||||| ||||||    ||||||    | || ||  || ||| |||      
gtaaactggatactgttgtcaaacctcatttg---------------cagactctctgg-------gtactgacaattccatgtcggttgttgcagTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCCACGCCAGAAAATGTGCACATCACATGA---GAATTATC--GAGATTAGTTGATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18169894|gb|BM339734.1|BM339734
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|16920990|gb|BM074929.1|BM074929
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|18165355|gb|BM335194.1|BM335194
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|91871428|gb|EB401415.1|EB401415
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|78023775|gb|DV492162.1|DV492162
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|78023788|gb|DV492175.1|DV492175
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|16922820|gb|BM075812.1|BM075812
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|6022165|gb|AW067093.1|AW067093
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|32835284|gb|CD974962.1|CD974962
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|14245658|gb|BG874240.1|BG874240
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|78080743|gb|DV509155.1|DV509155
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|211107178|gb|FL251311.1|FL251311
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAACATGCTTCGTCAT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|24769505|gb|CA404634.1|CA404634
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
EST: gi|18169973|gb|BM339813.1|BM339813
EST:     TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG                         TTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtgaactgca ... atcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatcgtactccttggttactgagtattgacacttccatgtcgatcactgcagTTGGAAGAACAACGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTCGTGCCAGAAAGTGTGCATGCTACATGACTCAAGTTTTCTAGAAATTTGTTT
                          tattgac  putative branch site (score: 2)