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...atgagacaataacaaattctctagaagatcaacttctcttcacacttttcagttctctagctactttgtctctttatagtaacaccatacttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC
species | Zea mays |
transcript | GRMZM2G408989_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|16920990|gb|BM074929.1|BM074929
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: TGTTATCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|78023775|gb|DV492162.1|DV492162
genomic: TGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|91871428|gb|EB401415.1|EB401415
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|16922820|gb|BM075812.1|BM075812
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: GTGGATAACTTAACTGGACAATATGTTATCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|60342889|gb|DN209862.1|DN209862
genomic: GTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|60344375|gb|DN211348.1|DN211348
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|14245658|gb|BG874240.1|BG874240
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: GCAGAAATGTGGATAACTTAACTGGGCAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|24769505|gb|CA404634.1|CA404634
genomic: GCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|78023788|gb|DV492175.1|DV492175
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|18165355|gb|BM335194.1|BM335194
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAEST: gi|32912106|gb|CF016918.1|CF016918
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtatggattg ... ttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGA
ttttcagttctctagctactttgtctctttatagtaacaccatacttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC
tagtaac putative branch site (score: 1)
cttattctc putative PPT
tttatagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagacaataacaaattctctagaagatcaacttctcttcacacttttcagttctctagctactttgtctctttatagtaacaccatacttattctcagGGCCTACCGGGCATTTTACATTCTAAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA