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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagaaccacacacttccaacaatcctcagtcttatgttttctgtttgtaaaatacacttatgcttatgttgcagGCTCTCAAACTTCTGTCTGTAATGGCGGCCATTCGTTGGGATGACGAGCCAGATAGGATTGAAAGCATCCTCACTTCAACACTTCTAGAAGGCTCTGTTG

Basic information

species Zea mays
transcript GRMZM2G407913_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407913_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 3'ss of exon 17
-----------------gtacaagaaccacacacttccaacaatcctcagtcttatgttttctgtttgtaaaatacacttatgcttatgttgcagGCTCTCAAACTTCTGTCTGTAATGGCGGCCATTCGTTGGGATGACGAGCCAGATAGGATTGAAAGCATCCTCACTTCAACACTTCTAGAAGGCTCTGTTG
                  |  |||  | |      |   | | | ||   | | ||      | ||||| ||||  ||||   ||  |||||||||||||||||||||| |||||| |||| |||||||| ||||||||  | || |||| ||| ||||  ||||||||||| ||||| ||||| || |||||| 
gtataggacttgaacccttctaagttctaatgggatgacatagttcttcctttgattccccttctttgttaaatggacttgcactcgtgttgcagGCTCTCAAACTTCTTTCTGTATTGGCTGCCATTCGCTGGGATGAGAAACCGGATAAGATCGAAAAAATCCTCACTTCCACACTCCTAGATGGTTCTGTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcctcagtcttatgttttctgtttgtaaaatacacttatgcttatgttgcagGCTCTCAAACTTCTGTCTGTAATGGCGGCCATTCGTTGGGATGACGAGCCAGATAGGATTGAAAGCATCCTCACTTCAACACTTCTAGAAGGCTCTGTTG
                            taaaatacacttat  TA-rich tract