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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttaccagtaactcagtgctgtgtgtttcaattgctagtttttctgctggaatttgatttttcttttgccttaatctttgtaatgaaaaattcttattttttggaactcgtcacaatatgctttgccttggcagCTCTGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAA

Basic information

species Zea mays
transcript GRMZM2G406553_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 4
gtaataatttaccagtaactcagtgctgtgtgtttcaattgctagtttttctgctggaatttgatttttcttttgccttaat--ctttgtaatgaaaaattcttattttttggaactcgtcacaatatgctttgccttggcagCTCTGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAA
                                          |  |||| ||   |  |  | |   |  |  ||    | |  | ||  | | ||   | | ||    |||    |  | |   || | |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||
------------------------------------------tgattttcctttagtgaactcaacatgatgatgatgaatttgccttacagtaaattttccatagaacttgttttttcttatggtaag-tttgccttggcagCTCTGGGATCTGACAGCTGGAAAGTTATTACATGATTTCAAGTGTCATGAAGGCCAGATTCAGTGCATAGATTTCCATCCCCATGAGTTCCTTCTGGCAA

upper sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G00890.1 (Glycine max), 3'ss of exon 5
gtaataatttaccagtaactcagtgctgtgtgtttcaattgctagtttttctgctggaatt-tgatttttcttttgccttaatctttgtaatgaaaaattcttattttttggaactcgtcaca-atatgctttgccttggcagCTCTGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAA
                          |||   |||   | |    |  || ||||  | || | | |       |   ||  | |||| ||  |||||||  | |       || |  |||   ||||| ||       |||| | |||||||| || || || ||  | || ||||| || || ||||| ||||| |||||||| || ||||||||||||||| ||||||| || || ||||
-------------------------atgtaaatttggctcgt--atggttgtgctaaacttgtaaatgagaacctatttttttgtttggaa--aaaaattgatgt-------aaattatcatgtatatgttt-------gcagTTATGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGATCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAA

upper sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 4
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 4
gtaataatttaccagtaactcagtgctgtgtgtttcaattgctagtttttctgctggaatttgatttttcttttgccttaatctttgtaatgaaaaattcttattttttggaactcgtcacaatatgctttgccttggcagCTCTGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAA
                                       ||  |  | | | |||      | |  | | | | |  |||| |||   | ||     || || ||||    | || | ||  | |     | | |   ||||| |||||||| || ||||||||||| || || || |||||  |||||||||| ||| | |||||||||||||||||||| ||||| || || |||||||
---------------------------------------tgaaaaatatgcagcttcccacttacatgtttgtgg--ttaaccttgtaagtgtttttttgtttttttaatcatcttgccaataaaatgactacttcaacagCTGTGGGATCTGACTGCTGGAAAGTTGTTGCACGATTTCAAAAGTCATGAGGGCCAGCTTCAGTGCATAGATTTTCATCCTCATGAATTTCTGCTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgaaaaattcttattttttggaactcgtcacaatatgctttgccttggcagCTCTGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAA
                                         ctttgcctt  CT-rich tract
      aaaaattcttattttt  TA-rich tract