1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtggtctaccattgtttccttctttttcatcatggatgcatttctttttctttctttctgaacttatgttttcttgatttttattgtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG
species | Zea mays |
transcript | GRMZM2G404855_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|60355306|gb|DN222279.1|DN222279
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|6166676|gb|AW144940.1|AW144940
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|60354405|gb|DN221378.1|DN221378
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|6166632|gb|AW144896.1|AW144896
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|6952333|gb|AW424401.1|AW424401
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|6195048|gb|AW147152.1|AW147152
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCEST: gi|6827805|gb|AW331448.1|AW331448
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
EST: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAG TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
genomic: CGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtc ... gtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTC
tttctttttctttctttctgaacttatgttttcttgatttttattgtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG
tcttgat putative branch site (score: 145)
ttatgttttcttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggtctaccattgtttccttctttttcatcatggatgcatttctttttctttctttctgaacttatgttttcttgatttttattgtacttgtagTGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG