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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatagattttcatgggtgaaacgtagctttgtacttgtgcttggtaactagacgtatggactatacttatacttcttttgttgttctggaagATACGGGACTCCATCTGTGCACTCTTTCCGGACAGGGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC

Basic information

species Zea mays
transcript GRMZM2G403554_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G403554_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g48860.1 (Oryza sativa), 3'ss of exon 2
-------------------gtatgatagatt-ttcatggg----tgaaacgtagct-ttgtacttgtgcttggtaactag-acgtatggactatacttatacttcttttgttgt---tctggaagATACGGGACTCCATCTGTGCACTCTTTCCGGACAGGGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC
                    |    |  ||| |||||       |     | | |  |  | ||  ||| |  |   ||  |  | |  |  | ||| || | | | ||||  |   |||| ||||||||||| |||||| ||||||| ||||||||  | |||||  |||||||||||| ||||||||| |||||||||||||| || || |||||||||||||
gtatggcagcatgagtttcttgcagtgcattattcataaaattatctggtgcaacaatctttctgatgcatcatttttaacatatctataagaaactgatgcatatgttgtaatgtatctgtaagATACGGGAGTCCATCCGTGCACTTTTTCCGGATCGAGAATGCATTACACTTGTGCGACCTGTGAATAATGAGAAAGATCTTCAGCGCCTTGATCAACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggtaactagacgtatggactatacttatacttcttttgttgttctggaagATACGGGACTCCATCTGTGCACTCTTTCCGGACAGGGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC
    tggtaac  putative branch site (score: 2)
                                  cttcttttgttgttct  putative PPT
                        tatacttata  TA-rich tract