1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccccccttttactgctcttgtaggcctgtgttcatataatcatatggagctatcgtttttttttgttcttttgttgagttctgttattggtgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGAGCAGTCTGATCAACAGCCTGAAGAGGTCCCGAGTGGTCAATGTCGGTT
species | Zea mays |
transcript | GRMZM2G403149_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCCGAGAATCTAATC-CTTTGCTTAAGAATTATTCCAGAAGCCATGAG CTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGEST: gi|26560075|gb|CA832310.1|CA832310
genomic: GTGCCGAGAATCTAATCAAATTGCTTAAGAATTATTCCAGAAGCCATGAGgtaaacgttt ... tgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
EST: TAAGAATTATTCCAGAAGCCATGAG CTGAAACTGGCAATTACGG-GGGTATTGTTGGACTTCCTAATGTTGGCAAGEST: gi|26559299|gb|CA831534.1|CA831534
genomic: TAAGAATTATTCCAGAAGCCATGAGgtaaacgttt ... tgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
EST: TTAAGAATTATTCCAGAAGCCATGAG CTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGEST: gi|87155945|gb|DY400734.1|DY400734
genomic: TTAAGAATTATTCCAGAAGCCATGAGgtaaacgttt ... tgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
EST: GTGCCGAGAATCTAATCAAATTGCTTAAGAATTATTCCAGAAGCCATGAG CTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGEST: gi|87155835|gb|DY400624.1|DY400624
genomic: GTGCCGAGAATCTAATCAAATTGCTTAAGAATTATTCCAGAAGCCATGAGgtaaacgttt ... tgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
EST: GTGCCGAGAATCTAATCAAATTGCTTAAGAATTATTCCAGAAGCCATGAG CTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
genomic: GTGCCGAGAATCTAATCAAATTGCTTAAGAATTATTCCAGAAGCCATGAGgtaaacgttt ... tgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAG
ggagctatcgtttttttttgttcttttgttgagttctgttattggtgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGAGCAGTCTGATCAACAGCCTGAAGAGGTCCCGAGTGGTCAATGTCGGTT
tttttttttgttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccccttttactgctcttgtaggcctgtgttcatataatcatatggagctatcgtttttttttgttcttttgttgagttctgttattggtgatttgcagCTGAAACTGGCAATTACGGTGGGTATTGTTGGACTTCCTAATGTTGGCAAGAGCAGTCTGATCAACAGCCTGAAGAGGTCCCGAGTGGTCAATGTCGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - -tactgct
- - - - - - - - - - - -gcctgtg
- - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt