1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagctgtgtgttaggcttatcacgaaggcttgtctccatctatgtagcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
species | Zea mays |
transcript | GRMZM2G392975_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|21331663|gb|BQ487044.1|BQ487044
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|60355915|gb|DN222888.1|DN222888
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|149111017|gb|EE294516.2|EE294516
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTTTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|71444237|gb|DR825287.1|DR825287
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|161590511|gb|EY962818.1|EY962818
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: CGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|78090400|gb|DV518774.1|DV518774
genomic: CGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|76923440|gb|DV169488.1|DV169488
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|149099303|gb|EE185339.2|EE185339
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGGTCGGCCCCTTCATCEST: gi|9732073|gb|BE510825.1|BE510825
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGG-TCGGCCCCTTCATC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|71330066|gb|DR801772.1|DR801772
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|78021357|gb|DV489744.1|DV489744
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|211493182|gb|FL033666.1|FL033666
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|60341153|gb|DN208126.1|DN208126
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|211308416|gb|FL121411.1|FL121411
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
agcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
ccataac putative branch site (score: 204)
tttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctgtgtgttaggcttatcacgaaggcttgtctccatctatgtagcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG