Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaatacacataaatatcaaaaagctattattgcttctctgcttatgcaagccataaataaagtgtttttttaatgtagATGAACATCAAGTTGACAAAGCAGCAAAAGTAGCTCGAAGG

Basic information

species Zea mays
transcript GRMZM2G386971_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428873|gb|DR809923.1|DR809923
EST:     TAGTTTGCTAGAACATTCTGTGCCAACAAATAGATCACCCAAAGATCCAG                         ATGAACATCAAGTTGACAAAGCAGCAAAAGTAGCTCGAAGG
genomic: TAGTTTGCTAGAACATTCTGTGCCAACAAATAGATCACCCAAAGATCCAGgtactgaata ... tttaatgtagATGAACATCAAGTTGACAAAGCAGCAAAAGTAGCTCGAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattattgcttctctgcttatgcaagccataaataaagtgtttttttaatgtagATGAACATCAAGTTGACAAAGCAGCAAAAGTAGCTCGAAGG
                                            ttttaat  putative branch site (score: 3)
                                       tgttttttt  CT-rich tract
                             ataaataaagtgtttt  TA-rich tract