Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT

Basic information

species Zea mays
transcript GRMZM2G382914_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 3'ss of exon 4
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT
                                                                  |||   |||| ||   |||||   |  |    |||| | ||  | | | |  || |||||  |||||||||   ||   |    | |||  || ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||
------------------------------------------------------------------taatatttttttaatcttcaatgtattctccaaaatatgttgcataatgc--ttatttca-gaataaaaaatacaactgtactgatatgg-ttaattatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGGCCATCGTTGGTGGATCCAAGGTCTCAACTAAGATTGGGGTGATTGAGT

upper sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G17600.1 (Glycine max), 3'ss of exon 4
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT
                                                 |  |  | |  | |  |||| | ||  || | ||  |  |  |     ||| |  | | |    | |||||| |||||   | |           ||||         || ||| | ||||||||||||||| || |||||||||||  | ||||| ||||  |||||||| || || |||||||| || ||||| ||  | |||||||| || |||||||
-----------------------------------------------gtttgtaggaactaggaagtaattgttagcttcattatatgaatgttgggtaatttatgtaatttatgcagtttattcatctgtta-----------tttg--------tttaattgtttcagGAACTTGACTATCTAGTTGGAGCTGTGTCAAACCCCAAGAGACCATTTGCTGCTATCGTTGGTGGGTCAAAGGTGTCTTCCAAGATTGGAGTTATTGAGT

upper sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT
                                                                        | ||  |  |||  |     |  | ||  |||| |||     | ||| | || ||       |  |   ||| |  |  | |   |||||| | |||||||||||| |||||||| |||||||| || ||||| |||||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||||||||||
-----------------------------------------------------------------------gtatttaaaatttgcagcataaagagta--tcttcttag---atgagtctctttatttt----actgatcagact--attacttgttttattgtgtcagGAACTTGATTACCTTGTCGGAGCTGTGGCAAACCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGTCATTGAGT

upper sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaa----tgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT
                                                                           |  |  | | ||     |  | |   |     ||   ||||  || |||   | |       |     | |||||| |    |   ||| |  | | ||||||||||||||||||||||||||||  | ||||| |||| ||||||||| || ||||||||||| || ||||| ||| | || ||||| || ||||| |
--------------------------------------------------------------------------cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356342|gb|CD440699.1|CD440699
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67031113|gb|CO459862.1|CO459862
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCANAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31355954|gb|CD440311.1|CD440311
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|148937378|gb|EC881559.2|EC881559
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67017421|gb|CO446170.1|CO446170
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|148934221|gb|EC878242.2|EC878242
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTATCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|18655174|gb|BM499979.1|BM499979
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67031860|gb|CO460609.1|CO460609
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|148947626|gb|EC893106.2|EC893106
EST:     GAGTTACCAAGTATGTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAA
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAA
EST: gi|18655175|gb|BM499980.1|BM499980
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCT-GTTGGAGCTGTTGCCA-CCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|21390017|gb|BQ528066.1|BQ528066
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|21987634|gb|BQ779162.1|BQ779162
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|148961193|gb|EE011908.2|EE011908
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|211204153|gb|FL151901.1|FL151901
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|18655173|gb|BM499978.1|BM499978
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31353610|gb|CD437967.1|CD437967
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|149089095|gb|EE178268.2|EE178268
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|211463797|gb|FL050216.1|FL050216
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAN                         GAACTTGACTACCTTGTTGGAG
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAG
EST: gi|149096538|gb|EE182286.2|EE182286
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|211376661|gb|FL050170.1|FL050170
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|21843195|gb|BQ703776.1|BQ703776
EST:     CTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: CTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|149089819|gb|EE179096.2|EE179096
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|78109940|gb|DV528355.1|DV528355
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31349922|gb|CD434279.1|CD434279
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|26457504|gb|CA829087.1|CA829087
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|211471398|gb|FL050271.1|FL050271
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|22936004|gb|BU572279.1|BU572279
EST:     ACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: ACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|109179056|gb|EC379786.1|EC379786
EST:     AGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAAG                         GAACTTGACTACCTTGTTG
genomic: AGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAA-Ggtaataaaat ... attatctcagGAACTTGACTACCTTGTTG
EST: gi|60396216|gb|DN229085.1|DN229085
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|60359146|gb|DN226119.1|DN226119
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31352972|gb|CD437329.1|CD437329
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|32937163|gb|CF041982.1|CF041982
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|22715290|gb|BU197684.1|BU197684
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGA
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGA
EST: gi|211471389|gb|FL050262.1|FL050262
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|4730492|gb|AI649658.1|AI649658
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67015745|gb|CO444494.1|CO444494
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67014158|gb|CO442907.1|CO442907
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|71316996|gb|DR795183.1|DR795183
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|67016329|gb|CO445078.1|CO445078
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|21843572|gb|BQ704153.1|BQ704153
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|149111078|gb|EE294575.2|EE294575
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAA                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31356119|gb|CD440476.1|CD440476
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|213179338|gb|FM194686.1|FM194686
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31351413|gb|CD435770.1|CD435770
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|18662174|gb|BM501784.1|BM501784
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|148933205|gb|EC876853.2|EC876853
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|71762961|gb|DR960898.1|DR960898
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|48690738|gb|CO049273.1|CO049273
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGT
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGT
EST: gi|31360995|gb|CD445352.1|CD445352
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|21760023|gb|BQ635564.1|BQ635564
EST:     TGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: TGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31356173|gb|CD440530.1|CD440530
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|78026883|gb|DV495270.1|DV495270
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCC
EST: gi|31250118|gb|CD219142.1|CD219142
EST:     GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTG
genomic: GAGTTACCAAGTATTTGAAGCCTGCTGTTGCTGGCTTCCTCATGCAGAAGgtaataaaat ... attatctcagGAACTTGACTACCTTGTTGGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT
                            atttgac  putative branch site (score: 4)
                                         ctttatt  putative PPT
     ttttcataaataaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaatgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA