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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagcacctagctcactgcaccagtggaaaaatatatcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAATGGCAATATCTATTGAGGATGTGCGCAGAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG

Basic information

species Zea mays
transcript GRMZM2G378949_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G378949_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 3'ss of exon 1
ctagcacctagctcactgcaccagtggaaaaatatatcttgat-ctagat-tttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAATGGCAATATCTATTGAGGATGTGCGCAGAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
   |||| | ||  | |  |  ||  |    ||   |  |  |  || || || | |||||  ||   ||  | | |||| |  | ||||  | | |  ||||||||||  |||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||
--tgcacttggccaaataaaatagaagttctatgggttgtcctattacatattcacatttacctttggaacatgatctcaattttgtgttcctttttatcagATGACAACAGCAATATCAATTGAGGATGTGCGTAGAGAGGTGAAAATTCTGAAGGCTTTATCTGGGCATTCGAATCTTGTCAAATTTTATGATGCATGTG

upper sequence: GRMZM2G378949_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G13920.1 (Glycine max), 3'ss of exon 1
ctagcacctagctcactgcaccagtggaaaaatatatcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAATGGCAATATCTATTGAGGATGTGCGCAGAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
 ||  |  ||               |      |  ||||     || | ||  |  ||  |    |   ||  | | |||   |  ||||| | | |||||||||    |||||  | || || ||||| || || ||||| ||||| |||||||| ||||||||||||   ||| | ||||||||||||||||| | ||
atatgaattaatctttgattttcaagcttttgtgaatctcaccttaaaattcttgcttgataatgatggttatcgtaattaactgatttttgtatggcagATGACTTCAGCAATTGCAATCGAAGATGTACGGAGGGAGGTCAAAATGTTGAAGGCTTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTG

upper sequence: GRMZM2G378949_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G40920.1 (Glycine max), 3'ss of exon 1
-ctagcacctagctcactgcaccagtggaaaaatatatcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAATGGCAATATCTATTGAGGATGTGCGCAGAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
 | | || |  |      ||     |    ||   | | |  ||||    || | |||     |  | ||  | | | |||   |  ||||| | | |||||||||    |||||  | || || |||||  | || ||||||||||| ||||| || ||||||||||||   ||| | ||||||||||||||||| | ||
tccatcaacatgaattaagctttgattttcaagcttttgtcaatctcaccttaaaattcttgcttgagaacac-cgtaattaactgatttttgtatggcagATGACTTCAGCAATTGCAATCGAAGATGTAAGGAGGGAGGTGAAAATGTTGAAAGCCTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAATGGCAATATCTATTGAGGATGTGCGCAGAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
                        ttcacctcattccttt  CT-rich tract
     ttatatttagtttgca  TA-rich tract