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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAATATGCCTCTACATCAAGAGCACCATGGGAAACCATTCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGAA

Basic information

species Zea mays
transcript GRMZM2G369991_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G369991_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
------------------------------gtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctg----ttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAATATGCCTCTACATCAAGAGCACCATGGG-AAACCATTCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGAA
                              |  | | | | |   |     ||    |  |   | ||   | | |   ||    |||   || | |  ||| |   |||||   ||| ||   ||  |  || | |||||  |      | | ||  |   |||| |  ||||| |||||||||||||||||||| |||||| |||||||||||||||| || | | ||           |    | |||   | |      | 
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagtttta---tgtgag--aaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGT-TGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG

upper sequence: GRMZM2G369991_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 3'ss of exon 4
--------------------------gtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctg----ttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAATATGCCTCTACATCAAGAGCACCATGGG-AAACCATTCAGGGTGTTCTAAGTC----TGCTTTTTTGTGAAGT---CTGCTCTTCATGATATTTGGTTTTTGAA
                          |  | | | | |   |     ||    |  |   | ||   | | |   ||    |||   || | |  ||| |   |||||   ||| ||   ||  |  || | |||||  |      | | ||  |   |||| |  ||||| |||||||||||||||||||| |||||| ||||||||||||||||     || |       |||||     |       ||| |    | ||||   
gttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagtttta---tgtgag--aaaacaactgatgataacttggaattgtttgtgtttgataggtgagGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAGCTTTT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAATATGCCTCTACATCAAGAGCACCATGGGAAACCATTCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGAA
                         ttataac  putative branch site (score: 2)
                         ttataaca  TA-rich tract