1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcctgataggtggtagctgggattgtgttgttgtttgccaaatttggatgcctttcttcacttagttcttcatggactgaatttgatactccccatgcagAGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAA
species | Zea mays |
transcript | GRMZM2G367834_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCCA AGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAAEST: gi|148953549|gb|EE153060.2|EE153060
genomic: ATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagttcta ... ccccatgcagAGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAA
EST: ATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAAGTAAGEST: gi|211072179|gb|FK971287.1|FK971287
genomic: ATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagttcta ... ccccatgcagAGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAACTAAG
EST: TGGTCCCTGTAAAAATNA-AGA-TGCAGTGAACAAGAAAG-GATGCTCAA AGT-CTTTGGACA-GGTCAGAAGT-GGAAGCTGAAACTAAG
genomic: TGGTCCCTGTAAAAAT-AGAGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagttcta ... ccccatgcagAGTTCTT-GCACAAGGTCAGA-GTTGGAGGCTGAAACTAAG
ggatgcctttcttcacttagttcttcatggactgaatttgatactccccatgcagAGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAA
atttgat putative branch site (score: 107)
tactcccc CT-rich tract
aatttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctgataggtggtagctgggattgtgttgttgtttgccaaatttggatgcctttcttcacttagttcttcatggactgaatttgatactccccatgcagAGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - gtagctg
- - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - -ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatact