Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT

Basic information

species Zea mays
transcript GRMZM2G361074_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361074_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 3'ss of exon 4
gtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGT--GGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT
|| ||| ||||||| |  |  ||| ||| ||   |||| |||||       ||   | | ||| |||   |||| || ||   ||||      |  |  |||||||||||| ||||||||||||||||||||||||||||||| |       |||||       ||  ||||||  |||||||||  |  || | |||   | | |
gttggttgccctggaaaat--gccacttaattggtgtggttgtt-------acctctgctcgttcaccgtgccttacttttctattt------tatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAA-GTTTCTCGT-ATCAAGTATTAGCACTAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305107|gb|FL162112.1|FL162112
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|71426824|gb|DR807874.1|DR807874
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307131|gb|FL162129.1|FL162129
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|78085341|gb|DV513734.1|DV513734
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|148950950|gb|EC896587.2|EC896587
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307122|gb|FL162120.1|FL162120
EST:     CTTCCACTGTATCAGCCGWTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211196752|gb|FL162102.1|FL162102
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|84979967|gb|DW530316.1|DW530316
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|33770787|gb|CF273081.1|CF273081
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|28187952|gb|CB179562.1|CB179562
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305102|gb|FL162107.1|FL162107
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211309155|gb|FL162139.1|FL162139
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|37621951|gb|CF675004.1|CF675004
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|116823511|gb|EC867051.1|EC867051
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307127|gb|FL162125.1|FL162125
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305104|gb|FL162109.1|FL162109
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305105|gb|FL162110.1|FL162110
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307126|gb|FL162124.1|FL162124
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|76294370|gb|DV033938.1|DV033938
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307136|gb|FL162134.1|FL162134
EST:     CTTCCACTGTATCAGCCGTTGDHTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|28188123|gb|CB179733.1|CB179733
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGCCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|71426825|gb|DR807875.1|DR807875
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|32912934|gb|CF017746.1|CF017746
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307124|gb|FL162122.1|FL162122
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|149085569|gb|EE175081.2|EE175081
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|78081690|gb|DV510102.1|DV510102
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211309154|gb|FL162138.1|FL162138
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305110|gb|FL162115.1|FL162115
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305106|gb|FL162111.1|FL162111
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307132|gb|FL162130.1|FL162130
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|113813271|gb|DW929554.1|DW929554
EST:     GTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: GTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305100|gb|FL162105.1|FL162105
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211309153|gb|FL162137.1|FL162137
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211196753|gb|FL162103.1|FL162103
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|76908744|gb|DV163077.1|DV163077
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|37622025|gb|CF675078.1|CF675078
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|28187964|gb|CB179574.1|CB179574
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307128|gb|FL162126.1|FL162126
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTWTGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307135|gb|FL162133.1|FL162133
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305101|gb|FL162106.1|FL162106
EST:     CTTCCACTGTATCAGCCGTTGGCTAACCACCCCNCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|28188239|gb|CB179849.1|CB179849
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|149085568|gb|EE175080.2|EE175080
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307123|gb|FL162121.1|FL162121
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|32915004|gb|CF019816.1|CF019816
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|101389549|gb|EB816709.1|EB816709
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305108|gb|FL162113.1|FL162113
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211309151|gb|FL162135.1|FL162135
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|60395946|gb|DN228816.1|DN228816
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|4827489|gb|AI668181.1|AI668181
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305113|gb|FL162118.1|FL162118
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307133|gb|FL162131.1|FL162131
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|9952798|gb|BE639381.1|BE639381
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211307129|gb|FL162127.1|FL162127
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAG
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAG
EST: gi|78026763|gb|DV495150.1|DV495150
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305114|gb|FL162119.1|FL162119
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGRATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305112|gb|FL162117.1|FL162117
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211309152|gb|FL162136.1|FL162136
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|37375689|gb|CF624299.1|CF624299
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST: gi|211305111|gb|FL162116.1|FL162116
EST:     CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG                         ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 202

GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 84

GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 115

GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 106

GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT
                             ttctaatttgtaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG